If you’re on the hunt for a satisfying, easy-to-make protein snack that doesn’t compromise on flavor or nostalgia, you’re in for a treat! High-Protein Bagel Bites are a game-changer for busy weekdays, meal prep, or post-workout fuel. These savory bites pack all the toasty, cheesy joy of classic bagel snacks but with a wholesome, energizing boost from Greek yogurt and two kinds of melty cheese. Every golden bite is a celebration of chewy, cheesy, bagel goodness—just with a high-protein twist you can feel good about.

Ingredients You’ll Need
I love how this recipe comes together with just a handful of everyday ingredients, each bringing something special to your bagel bites. From creaminess and stretch, to a chewy crumb and irresistible golden tops, every component makes these bites sing!
- Plain nonfat Greek yogurt: Adds protein, creaminess, and a subtle tang that keeps the dough moist and flavorful.
- Self-rising flour: Makes the dough super simple—no yeast required for that perfect rise! (If using all-purpose, add baking powder and salt for the same effect.)
- Shredded mozzarella cheese: Gives a lovely gooey melt on top and ups the protein factor.
- Grated Parmesan cheese: Adds sharp, salty richness and helps the bagel bites turn deliciously golden in the oven.
- Egg whites (or 1 egg, beaten): Helps the toppings stick and gives the bites that classic shiny bagel crust.
- Garlic powder: Infuses every bite with tantalizing, savory depth.
- Onion powder: Lends a gentle sweetness and irresistible aroma to your bites.
- Cooking spray or olive oil: Keeps your bagel bites from sticking and ensures a crisp, golden bottom.
How to Make High-Protein Bagel Bites
Step 1: Get Your Oven and Pan Ready
Start by preheating your oven to 375°F (190°C). Line a baking sheet with parchment paper or give it a quick mist of cooking spray or olive oil. This minor step means no sticking, easy cleanup, and perfectly golden bottoms—so worth it!
Step 2: Mix the Dough
In a medium bowl, stir together the Greek yogurt and self-rising flour (or your DIY blend) until a shaggy dough forms. Don’t be shy with your hands—you want the flour fully incorporated and everything holding together nicely.
Step 3: Knead Until Smooth
Dust your surface with a little flour to prevent sticking, then briefly knead the dough for about 1 minute. You’re aiming for a smooth, slightly tacky, elastic ball. Don’t overwork it; just enough to bring it together.
Step 4: Shape the Bites
Divide your dough into 12 equal pieces—I like to use a bench scraper or cut the dough in half a few times to keep it even. Roll each piece into a little ball, then flatten them slightly for that classic bagel bite look. Set them on your prepared baking sheet, leaving just a bit of space between each one.
Step 5: Season and Brush
Whisk your egg whites (or beaten egg) with the garlic powder and onion powder in a small bowl. Use a brush or spoon to coat the tops of each dough piece. This lets every bite soak up that amazing flavor and gets you that glossy bakery-style finish.
Step 6: Topping Time!
Sprinkle the shredded mozzarella and grated Parmesan evenly over the bites. Don’t be afraid to get a little generous—extra cheese means extra deliciousness.
Step 7: Bake to Golden Perfection
Slide the baking sheet into your preheated oven and bake for 20 to 22 minutes. Keep an eye on them near the end; you want them golden brown and cooked through, with cheese bubbling and tiny crispy edges.
Step 8: Cool and Enjoy
Let your High-Protein Bagel Bites cool for a few minutes before serving—this not only makes them easier to handle but lets the flavors settle. Admire your handiwork, breathe in that incredible aroma, and dig in!
How to Serve High-Protein Bagel Bites

Garnishes
Sprinkle your bagel bites with fresh chopped herbs like parsley or chives for a pop of color and extra flavor. A touch of sesame or poppy seeds also gives them an authentic deli finish, and a final dusting of cracked black pepper is always a win.
Side Dishes
Pair these bites with crisp veggie sticks, a zingy Greek salad, or a bowl of tomato soup for a hearty lunch or snack board. If you’re feeling decadent, swirl together some Greek yogurt and sriracha for a protein-packed dip on the side!
Creative Ways to Present
Layer your High-Protein Bagel Bites on a wooden board surrounded by mini pickles, sliced veggies, and dollops of flavored cream cheese. For parties, skewer each bite with a festive toothpick and serve with an array of dipping sauces—they’ll disappear fast!
Make Ahead and Storage
Storing Leftovers
To keep your High-Protein Bagel Bites tasting their best, let them cool completely and store in an airtight container in the refrigerator. They’ll stay fresh for up to 4 days without losing flavor or texture.
Freezing
If you want a batch on hand for busy weeks, freeze the cooled bagel bites in a single layer, then transfer to a freezer bag. They’ll keep for up to 2 months. No need to thaw before reheating—straight from the freezer works wonders!
Reheating
For the freshest results, pop refrigerated or frozen bagel bites in a preheated oven or air fryer at 350°F for 4-6 minutes. This crisps up the edges and re-melts the cheese beautifully, making them taste bakery-fresh.
FAQs
Can I make these High-Protein Bagel Bites gluten-free?
Absolutely! Use a 1:1 gluten-free baking blend with added baking powder and salt to mimic self-rising flour. The texture may be a bit softer, but you’ll still get all the high-protein goodness.
What other cheeses can I use?
Feel free to experiment—shredded cheddar, pepper jack, or even part-skim ricotta work brilliantly as mix-ins or toppings. Just aim for lower-moisture cheeses to avoid soggy bites.
Can I add extra protein to the dough?
Definitely. Mix in finely chopped turkey, chicken, or even cooked crumbled sausage for a meaty version. You can also sprinkle in some unflavored protein powder, but start with 1-2 tablespoons so the dough stays soft.
Can I use flavored Greek yogurt?
For this recipe, plain Greek yogurt is best—flavored or sweetened varieties can change both the taste and texture. If you want more flavor, try adding herbs or spices directly to the dough or the egg wash.
What if I don’t have self-rising flour?
No problem! Just whisk together 1 cup all-purpose flour with 1½ teaspoons baking powder and ½ teaspoon salt to make a homemade self-rising blend that works perfectly for these High-Protein Bagel Bites.
Final Thoughts
I can’t wait for you to try these High-Protein Bagel Bites in your own kitchen! Whether you’re a meal-prep pro, a cheese lover, or just craving a cozy, protein-packed snack, this recipe is a total crowd-pleaser. Enjoy every bite—and don’t be surprised when they become your new favorite snack!
Print
High-Protein Bagel Bites Recipe
- Prep Time: 10 minutes
- Cook Time: 20 minutes
- Total Time: 30 minutes
- Yield: 12 bagel bites
- Category: Snack
- Method: Baking
- Cuisine: American
- Diet: High-Protein, Vegetarian
Description
These High-Protein Bagel Bites are a delicious and nutritious snack option that packs a protein punch. Made with Greek yogurt and topped with cheese, they are easy to make and perfect for a quick bite on the go.
Ingredients
Dough:
- 1 cup plain nonfat Greek yogurt
- 1 cup self-rising flour (or 1 cup all-purpose flour plus 1½ teaspoons baking powder and ½ teaspoon salt)
Toppings:
- ½ cup shredded mozzarella cheese
- ¼ cup grated Parmesan cheese
- 2 tablespoons egg whites (or 1 egg, beaten)
- ½ teaspoon garlic powder
- ½ teaspoon onion powder
- cooking spray or olive oil for greasing
Instructions
- Preheat the oven: Preheat the oven to 375°F (190°C) and line a baking sheet with parchment paper or lightly grease it.
- Make the dough: In a medium bowl, combine the Greek yogurt and self-rising flour until a dough forms. Knead the dough briefly on a floured surface until smooth.
- Shape the bagel bites: Divide the dough into 12 equal portions and roll each into a ball. Flatten slightly and place on the prepared baking sheet.
- Prepare the toppings: In a small bowl, mix the egg whites with garlic powder and onion powder. Brush the tops of each dough ball with the egg mixture. Sprinkle shredded mozzarella and Parmesan cheese evenly over the tops.
- Bake: Bake for 20–22 minutes, or until golden brown and cooked through. Let cool slightly before serving.
Notes
- For extra flavor, try adding dried herbs like oregano or basil to the dough.
- You can also mix in chopped turkey or chicken for even more protein.
- Store leftovers in the fridge and reheat in the oven or air fryer for best texture.
Nutrition
- Serving Size: 1 bagel bite
- Calories: 78
- Sugar: 0.5 g
- Sodium: 134 mg
- Fat: 2.2 g
- Saturated Fat: 1.1 g
- Unsaturated Fat: 0.9 g
- Trans Fat: 0 g
- Carbohydrates: 9.2 g
- Fiber: 0.4 g
- Protein: 6.1 g
- Cholesterol: 6 mg

